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VIM vimentin [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705289, updated on 5-Mar-2024

Summary

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Official Symbol
VIMprovided by VGNC
Official Full Name
vimentinprovided by VGNC
Primary source
VGNC:VGNC:78769
Locus tag
EGK_19488
See related
Ensembl:ENSMMUG00000003193
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See VIM in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (18373874..18383435)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (17359059..17368620)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670108 Neighboring gene uncharacterized LOC107000055 Neighboring gene butyrophilin subfamily 2 member A2-like Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene B-cell CLL/lymphoma 7 protein family member C pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Changes in hippocampal ultrastructure and vimentin expression in rhesus monkeys following selective deep hypothermia and blood occlusion. Li BC, et al. Genet Mol Res, 2015 Jan 30. PMID 25730001
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Selective cerebral profound hypothermia following 10-min occlusion of the bilateral common carotid arteries was able to downregulate vimentin expression in the hippocampus.
    Title: Changes in hippocampal ultrastructure and vimentin expression in rhesus monkeys following selective deep hypothermia and blood occlusion.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vimentin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    18373874..18383435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015146563.2 → XP_015002049.1  vimentin

    UniProtKB/TrEMBL
    A0A663D8Q7, A0A8J8Y659, F7EIU5, F7EIV0, G7N1N6
    Related
    ENSMMUP00000004266.4, ENSMMUT00000004526.4
    Conserved Domains (2) summary
    pfam00038
    Location:102 → 410
    Filament; Intermediate filament protein
    pfam04732
    Location:14 → 101
    Filament_head; Intermediate filament head (DNA binding) region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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