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zgc:153631 zgc:153631 [ Danio rerio (zebrafish) ]

Gene ID: 751714, updated on 27-Mar-2024

Summary

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Official Symbol
zgc:153631provided by ZNC
Official Full Name
zgc:153631provided by ZNC
Primary source
ZFIN:ZDB-GENE-060825-208
See related
Ensembl:ENSDARG00000068993 AllianceGenome:ZFIN:ZDB-GENE-060825-208
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc41c11; wu:fc41c11
Summary
Predicted to be involved in several processes, including defense response to bacterium; negative regulation of alpha-beta T cell proliferation; and positive regulation of macromolecule metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See zgc:153631 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (22358008..22369783)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (22336769..22348544)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 1 Neighboring gene mitotic arrest deficient 2 like 2 Neighboring gene si:dkey-23c22.5 Neighboring gene si:dkey-23c22.6 Neighboring gene tumor necrosis factor receptor superfamily member 14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC153631

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of alpha-beta T cell proliferation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of T cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cytokine production involved in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of peptidyl-tyrosine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC751714

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045424.1 → NP_001038889.1  uncharacterized protein LOC751714

    See identical proteins and their annotated locations for NP_001038889.1

    Status: PREDICTED

    Source sequence(s)
    BC122357
    UniProtKB/TrEMBL
    Q0P402
    Related
    ENSDARP00000090786.2, ENSDART00000100014.4
    Conserved Domains (3) summary
    cd00185
    Location:169 → 231
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    cd13405
    Location:70 → 179
    TNFRSF14_teleost; Tumor necrosis factor receptor superfamily member 14 (TNFRSF14) in teleost; also known as herpes virus entry mediator (HVEM)
    cl22855
    Location:2 → 71
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    22358008..22369783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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