U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ino80b INO80 complex subunit B [ Danio rerio (zebrafish) ]

Gene ID: 768122, updated on 27-Mar-2024

Summary

Official Symbol
ino80bprovided by ZNC
Official Full Name
INO80 complex subunit Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-69
See related
Ensembl:ENSDARG00000062749 AllianceGenome:ZFIN:ZDB-GENE-061013-69
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153347
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be part of Ino80 complex. Orthologous to human INO80B (INO80 complex subunit B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ino80b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (7696693..7707213)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (7463324..7473844)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 3 like Neighboring gene aminoadipate aminotransferase Neighboring gene inturned planar cell polarity protein Neighboring gene tRNA methyltransferase 10B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of Ino80 complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077258.1NP_001070726.1  INO80 complex subunit B

    See identical proteins and their annotated locations for NP_001070726.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124663
    UniProtKB/TrEMBL
    Q08BL6
    Related
    ENSDARP00000085532.4, ENSDART00000091099.6
    Conserved Domains (1) summary
    pfam04438
    Location:306333
    zf-HIT; HIT zinc finger

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    7696693..7707213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)