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cuedc1a CUE domain containing 1a [ Danio rerio (zebrafish) ]

Gene ID: 768297, updated on 27-Mar-2024

Summary

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Official Symbol
cuedc1aprovided by ZNC
Official Full Name
CUE domain containing 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061027-344
See related
Ensembl:ENSDARG00000068716 AllianceGenome:ZFIN:ZDB-GENE-061027-344
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153423
Summary
Predicted to enable ubiquitin binding activity. Orthologous to human CUEDC1 (CUE domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See cuedc1a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (37137398..37167448)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (37193655..37223690)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene myosin XVIIIAa Neighboring gene vascular endothelial zinc finger 1a Neighboring gene kinase suppressor of ras 1a Neighboring gene neurofibromin 1b Neighboring gene uncharacterized LOC101886660

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC153423

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
CUE domain containing 1a; CUE domain-containing protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077461.1 → NP_001070929.1  CUE domain-containing protein 1a

    See identical proteins and their annotated locations for NP_001070929.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124347
    UniProtKB/TrEMBL
    Q05AM9
    Related
    ENSDARP00000116146.1, ENSDART00000131777.2
    Conserved Domains (1) summary
    cd14366
    Location:35 → 76
    CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    37137398..37167448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169171.4 → XP_005169228.1  CUE domain containing 1a isoform X3

    UniProtKB/TrEMBL
    A0A8M2BGI1
    Related
    ENSDARP00000100672.2, ENSDART00000114909.4
    Conserved Domains (1) summary
    cd14366
    Location:36 → 77
    CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

  2. XM_005169169.4 → XP_005169226.1  CUE domain containing 1a isoform X1

    See identical proteins and their annotated locations for XP_005169226.1

    UniProtKB/TrEMBL
    A0A8M2BGJ9
    Conserved Domains (1) summary
    cd14366
    Location:36 → 77
    CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

  3. XM_009305565.3 → XP_009303840.1  CUE domain containing 1a isoform X2

    UniProtKB/TrEMBL
    A0A8M3AX44
    Conserved Domains (1) summary
    cd14366
    Location:36 → 77
    CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

  4. XM_009305563.3 → XP_009303838.1  CUE domain containing 1a isoform X1

    See identical proteins and their annotated locations for XP_009303838.1

    UniProtKB/TrEMBL
    A0A8M2BGJ9
    Conserved Domains (1) summary
    cd14366
    Location:36 → 77
    CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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