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rab36 RAB36, member RAS oncogene family [ Danio rerio (zebrafish) ]

Gene ID: 780839, updated on 27-Mar-2024

Summary

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Official Symbol
rab36provided by ZNC
Official Full Name
RAB36, member RAS oncogene familyprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040910-5
See related
Ensembl:ENSDARG00000014058 AllianceGenome:ZFIN:ZDB-GENE-040910-5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158229
Summary
Predicted to enable GTP binding activity and GTPase activity. Orthologous to human RAB36 (RAB36, member RAS oncogene family). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See rab36 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (17223681..17232437, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (17265717..17274454, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide Neighboring gene DEP domain containing 5, GATOR1 subcomplex subunit Neighboring gene uncharacterized LOC110440068 Neighboring gene guanine nucleotide binding protein (G protein), alpha z polypeptide Neighboring gene signal peptide peptidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. CiliaCarta: An integrated and validated compendium of ciliary genes. van Dam TJP, et al. PLoS One, 2019. PMID 31095607, Free PMC Article
  2. RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways. Li ZH, et al. PLoS One, 2013. PMID 24204792, Free PMC Article
  3. Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. Li Y, et al. Comp Funct Genomics, 2004. PMID 18629171, Free PMC Article
  4. A plasmid library of full-length zebrafish rab proteins for in vivo cell biology. Hall TE, et al. Cell Logist, 2017. PMID 28396820, Free PMC Article
  5. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ras-related protein Rab-36
NP_001073128.1
XP_009303483.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079660.1 → NP_001073128.1  ras-related protein Rab-36

    See identical proteins and their annotated locations for NP_001073128.1

    Status: PROVISIONAL

    Source sequence(s)
    BC127570
    UniProtKB/TrEMBL
    A0A8N7UYG4, A0PJQ5
    Related
    ENSDARP00000039309.6, ENSDART00000038577.9
    Conserved Domains (2) summary
    smart00175
    Location:57 → 216
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:56 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    17223681..17232437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305208.2 → XP_009303483.1  ras-related protein Rab-36 isoform X1

    UniProtKB/TrEMBL
    A0A8M3BCW7
    Conserved Domains (2) summary
    smart00175
    Location:57 → 182
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:56 → 187
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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