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fam133b family with sequence similarity 133 member B [ Danio rerio (zebrafish) ]

Gene ID: 790942, updated on 27-Mar-2024

Summary

Official Symbol
fam133bprovided by ZNC
Official Full Name
family with sequence similarity 133 member Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-229
See related
Ensembl:ENSDARG00000013863 AllianceGenome:ZFIN:ZDB-GENE-060503-229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
FAM133; wu:fc17e01; zgc:153800; si:ch211-287b5.3
Summary
Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See fam133b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (40337462..40347943)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (40750441..40760823)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene granulin antisense Neighboring gene granulin a, tandem duplicate 2 Neighboring gene cyclin dependent kinase 6 Neighboring gene HEPACAM family member 2 Neighboring gene VPS50 EARP/GARPII complex subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080087.1NP_001073556.1  protein FAM133

    See identical proteins and their annotated locations for NP_001073556.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128660
    UniProtKB/Swiss-Prot
    A1A5I1
    Related
    ENSDARP00000083980.4, ENSDART00000089547.6

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    40337462..40347943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468140.1XP_021323815.1  protein FAM133 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PRU0
    Related
    ENSDARP00000119134.1, ENSDART00000140857.3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395058.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    557..2606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)