U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

stmn3 stathmin-like 3 [ Danio rerio (zebrafish) ]

Gene ID: 798970, updated on 27-Mar-2024

Summary

Official Symbol
stmn3provided by ZNC
Official Full Name
stathmin-like 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-081124-2
See related
Ensembl:ENSDARG00000038465 AllianceGenome:ZFIN:ZDB-GENE-081124-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be active in cytoplasm and neuron projection. Orthologous to human STMN3 (stathmin 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See stmn3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (58543416..58561460)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (58549201..58566608)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene neuronal acetylcholine receptor subunit alpha-4-like Neighboring gene ADP-ribosylation factor related protein 1 Neighboring gene helicase with zinc finger 2a Neighboring gene Sp7 transcription factor

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in microtubule depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of microtubule polymerization or depolymerization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of microtubule polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    58543416..58561460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001339340.8XP_001339376.4  stathmin-3

    UniProtKB/TrEMBL
    A0A8M1Q1S2, E7FFU5
    Related
    ENSDARP00000128691.1, ENSDART00000157018.2
    Conserved Domains (1) summary
    pfam00836
    Location:43175
    Stathmin; Stathmin family