spata17 spermatogenesis associated 17 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spata17provided by ZNC
Official Full Name: spermatogenesis associated 17provided by ZNC
Primary source: ZFIN:ZDB-GENE-111214-1
See related: Ensembl:ENSDARG00000054414 AllianceGenome:ZFIN:ZDB-GENE-111214-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable calmodulin binding activity. Orthologous to human SPATA17 (spermatogenesis associated 17). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (30205258..30274320)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (30188295..30257357)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The zebra fish SPATA17 gene was expressed strongly in testis and a slight amount of expression in ovary.
Title: Overexpression a novel zebra fish spermatogenesis-associated gene 17 (SPATA17) induces apoptosis in GC-1 cells.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calmodulin binding	IBA Inferred from Biological aspect of Ancestor more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in establishment of meiotic spindle localization	IBA Inferred from Biological aspect of Ancestor more info
involved_in mitotic cell cycle	IBA Inferred from Biological aspect of Ancestor more info
involved_in spindle organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in spindle pole	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: spermatogenesis-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001142264.1 → NP_001135736.1 spermatogenesis-associated protein 17

See identical proteins and their annotated locations for NP_001135736.1

Status: PROVISIONAL

Source sequence(s)

FJ358583

UniProtKB/TrEMBL

A0A8M1NQK1, B6VAM9

Related

ENSDARP00000071067.3, ENSDART00000076596.6

Conserved Domains (1) summary

COG5022
Location:87 → 161

COG5022; Myosin heavy chain [General function prediction only]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007128.7 Reference GRCz11 Primary Assembly

Range

30205258..30274320

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009293137.1 → XP_009291412.1 spermatogenesis-associated protein 17 isoform X1

UniProtKB/TrEMBL

A0A8M3AJ42

Conserved Domains (1) summary

COG5022
Location:1 → 75

COG5022; Myosin heavy chain [General function prediction only]