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LINC00597 long intergenic non-protein coding RNA 597 [ Homo sapiens (human) ]

Gene ID: 81698, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00597provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 597provided by HGNC
Primary source
HGNC:HGNC:1193
See related
AllianceGenome:HGNC:1193
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf5
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Genomic context

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See LINC00597 in Genome Data Viewer
Location:
15q24.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (77223893..77225404, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (75084359..75085870, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (77516235..77517746, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:77335480-77336679 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6695 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9889 Neighboring gene tetraspanin 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77376319-77376819 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77406591-77406779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77429442-77429992 Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77448039-77448540 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77448541-77449040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9893 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 27 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:77574557-77575155 Neighboring gene non-histone chromosomal protein HMG-17 pseudogene Neighboring gene MPRA-validated peak2392 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:77708008-77708676 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6698 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9896 Neighboring gene high mobility group 20A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77787952-77788752 Neighboring gene Sharpr-MPRA regulatory region 2172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77789555-77790354 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77799871-77800847 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77801824-77802800 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77802801-77803775

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of C15orf5, a heart-enriched transcript on chromosome 15q23-q24. Carim-Todd L, et al. DNA Seq, 2001 Jul. PMID 11697146
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • MGC120146, MGC120147, MGC120148, MGC120149

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087465

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    77223893..77225404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    75084359..75085870 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_030944.1: Suppressed sequence

    Description
    NM_030944.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9H2U6.1 GenPept UniProtKB/Swiss-Prot:Q9H2U6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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