U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT2G25370 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817076, updated on 15-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
AT2G25370
Gene description
RING/U-box superfamily protein
Primary source
Araport:AT2G25370
Locus tag
AT2G25370
See related
TAIR:AT2G25370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13B15.3; F13B15_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT2G25370 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (10806680..10809945)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene PNAS-3-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene miscRNA Neighboring gene miscRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RING/U-box superfamily protein
NP_001189600.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1).
NP_180109.2
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10806680..10809945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202671.1 → NP_001189600.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189600.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IRP1, Q9SKL1
    Conserved Domains (2) summary
    smart00647
    Location:314 → 379
    IBR; In Between Ring fingers
    pfam01485
    Location:393 → 441
    IBR; IBR domain, a half RING-finger domain

  2. NM_128095.2 → NP_180109.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180109.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IRP0, Q9SKL1
    Conserved Domains (3) summary
    smart00647
    Location:371 → 436
    IBR; In Between Ring fingers
    pfam01485
    Location:450 → 498
    IBR; IBR domain, a half RING-finger domain
    cl14782
    Location:208 → 288
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools