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SK20 SKP1-like 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819203, updated on 15-Oct-2023

Summary

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Gene symbol
SK20
Gene description
SKP1-like 20
Primary source
Araport:AT2G45950
Locus tag
AT2G45950
See related
TAIR:AT2G45950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASK20; F4I18.7; SKP1-like 20
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Genomic context

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See SK20 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (18904324..18908121, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene hypothetical protein (DUF295) Neighboring gene plasma membrane intrinsic protein 1B Neighboring gene cytochrome P450, family 86, subfamily A, polypeptide 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
  2. Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis. Yasuhara M, et al. J Exp Bot, 2004 Sep. PMID 15310821
  3. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084596.2
NM_001337163.1
NM_001337164.1
NM_001337165.1
NM_130158.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKP1-like 20
NP_001078065.1
  • SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 1496 Blast hits to 1480 proteins in 265 species: Archae - 0; Bacteria - 13; Metazoa - 562; Fungi - 181; Plants - 479; Viruses - 9; Other Eukaryotes - 252 (source: NCBI BLink).
NP_566058.2
  • SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18904324..18908121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130158.4 → NP_566058.2  SKP1-like 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566058.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTC9
    Conserved Domains (2) summary
    smart00512
    Location:15 → 116
    Skp1; Found in Skp1 protein family
    pfam01466
    Location:90 → 153
    Skp1; Skp1 family, dimerization domain

  2. NM_001084596.2 → NP_001078065.1  SKP1-like 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078065.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQG7, B3H4L0, O80824, Q94K04
    UniProtKB/TrEMBL
    A0A178VTC9
    Conserved Domains (2) summary
    smart00512
    Location:15 → 116
    Skp1; Found in Skp1 protein family
    pfam01466
    Location:90 → 153
    Skp1; Skp1 family, dimerization domain

  3. NM_001337163.1 → NP_001325355.1  SKP1-like 20 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTC9

  4. NM_001337164.1 → NP_001325353.1  SKP1-like 20 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTC9

  5. NM_001337165.1 → NP_001325354.1  SKP1-like 20 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQG7, B3H4L0, O80824, Q94K04
    UniProtKB/TrEMBL
    A0A178VTC9
    Conserved Domains (2) summary
    smart00512
    Location:15 → 116
    Skp1; Found in Skp1 protein family
    pfam01466
    Location:90 → 153
    Skp1; Skp1 family, dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MQG7.1

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