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XBAT35 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821907, updated on 15-Feb-2024

Summary

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Gene symbol
XBAT35
Gene description
uncharacterized protein
Primary source
Araport:AT3G23280
Locus tag
AT3G23280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
XB3 ortholog 5 in Arabidopsis thaliana
Summary
Encodes a ubiquitin ligase that is a novel player in ethylene signaling involved in negatively regulating apical hook curvature, with alternative splicing controlling dual targeting to the nuclear and cytoplasmic compartments.
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Genomic context

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See XBAT35 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (8321329..8324477)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Neighboring gene LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response. Liu H, et al. Plant Physiol, 2017 Nov. PMID 28951488, Free PMC Article
  2. XBAT35, a novel Arabidopsis RING E3 ligase exhibiting dual targeting of its splice isoforms, is involved in ethylene-mediated regulation of apical hook curvature. Carvalho SD, et al. Mol Plant, 2012 Nov. PMID 22628544
  3. ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling. Yu F, et al. Mol Plant, 2020 Nov 2. PMID 32919085
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling.
    Title: ESCRT-I Component VPS23A Is Targeted by E3 Ubiquitin Ligase XBAT35 for Proteasome-Mediated Degradation in Modulating ABA Signaling.
  2. these results highlight a novel role for XBAT35.2 in cell death induction and defense against pathogens.
    Title: The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response.
  3. XBAT35 defines a novel player in ethylene signaling involved in negatively regulating apical hook curvature
    Title: XBAT35, a novel Arabidopsis RING E3 ligase exhibiting dual targeting of its splice isoforms, is involved in ethylene-mediated regulation of apical hook curvature.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_113229.4
NM_180297.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_566724.1
  • XB3 ortholog 5 in Arabidopsis thaliana (XBAT35); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 4 in Arabidopsis thaliana (TAIR:AT4G14365.1); Has 26340 Blast hits to 15027 proteins in 881 species: Archae - 61; Bacteria - 2219; Metazoa - 13958; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7029 (source: NCBI BLink).
NP_850628.1
  • XB3 ortholog 5 in Arabidopsis thaliana (XBAT35); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 4 in Arabidopsis thaliana (TAIR:AT4G14365.1); Has 26382 Blast hits to 15025 proteins in 882 species: Archae - 61; Bacteria - 2221; Metazoa - 14003; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7024 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8321329..8324477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113229.4 → NP_566724.1  uncharacterized protein AT3G23280 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566724.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q4FE47, Q8L9Z0, Q94AX6, Q9LTC1
    UniProtKB/TrEMBL
    A0A178V6I9, A0A5S9XF06
    Conserved Domains (4) summary
    cd00204
    Location:15 → 128
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:15 → 106
    Ank_2; Ankyrin repeats (3 copies)
    pfam13920
    Location:409 → 456
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:39 → 73
    ANK; ANK repeat [structural motif]

  2. NM_180297.4 → NP_850628.1  uncharacterized protein AT3G23280 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850628.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6J5
    Conserved Domains (4) summary
    cd00204
    Location:15 → 128
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:15 → 106
    Ank_2; Ankyrin repeats (3 copies)
    pfam13920
    Location:385 → 432
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:39 → 73
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4FE47.1

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