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    PARD3-DT PARD3 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100505601, updated on 10-Oct-2023

    Summary

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    Official Symbol
    PARD3-DTprovided by HGNC
    Official Full Name
    PARD3 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:44964
    See related
    Ensembl:ENSG00000226386 AllianceGenome:HGNC:44964
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PARD3-AS1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See PARD3-DT in Genome Data Viewer
    Location:
    10p11.21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (34815768..34816422)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (34844311..34844965)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (35104696..35105350)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator Neighboring gene ribosomal protein L37 pseudogene 18 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2293 Neighboring gene ribosomal protein S12 pseudogene 16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35026216-35026716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35067774-35068274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35068275-35068775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35081917-35082619 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:35081214-35081916 Neighboring gene Sharpr-MPRA regulatory region 397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35207011-35207678 Neighboring gene MPRA-validated peak927 silencer Neighboring gene SS18 like 2 pseudogene 1 Neighboring gene RNA, U6 small nuclear 847, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • PARD3 antisense RNA 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108043.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BF511037, BX089194
      Related
      ENST00000446211.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      34815768..34816422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      34844311..34844965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases