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    Cdhr4 cadherin-related family member 4 [ Mus musculus (house mouse) ]

    Gene ID: 69398, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Cdhr4provided by MGI
    Official Full Name
    cadherin-related family member 4provided by MGI
    Primary source
    MGI:MGI:1916648
    See related
    Ensembl:ENSMUSG00000032595 AllianceGenome:MGI:1916648
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cdh29
    Summary
    Predicted to be involved in cell adhesion. Predicted to be integral component of plasma membrane. Orthologous to human CDHR4 (cadherin related family member 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 36.0), ovary adult (RPKM 21.9) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cdhr4 in Genome Data Viewer
    Location:
    9 F1; 9 59.07 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (107869656..107876880)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (107992457..107999681)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3858 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107878063-107878250 Neighboring gene STARR-positive B cell enhancer ABC_E2913 Neighboring gene ubiquitin-like modifier activating enzyme 7 Neighboring gene inka box actin regulator 1 Neighboring gene RIKEN cDNA 4930535L15 gene Neighboring gene STARR-positive B cell enhancer ABC_E61 Neighboring gene inositol hexaphosphate kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2305 Neighboring gene STARR-positive B cell enhancer ABC_E6803 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene ring finger protein 123

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Evaluation of somatic alterations of Pcdh-alpha transcripts in the brain by cDNA analysis without PCR. Hirayama T, et al. Genes Cells, 2006 Jan. PMID 16371135
    2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. constructed cDNA libraries from the mouse cerebral cortex without using pcr.
      Title: Evaluation of somatic alterations of Pcdh-alpha transcripts in the brain by cDNA analysis without PCR.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Potential readthrough

    Included gene: Uba7

    Potential readthrough

    Included gene: Ip6k1

    Homology

    Clone Names

    • MGC144383, MGC144384, 1700021K14Rik, D330022A01Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    cadherin-related family member 4
    Names
    cadherin-like 29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378391.1 → NP_001365320.1  cadherin-related family member 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AL731808
      UniProtKB/TrEMBL
      H3BJZ2
      Related
      ENSMUSP00000135184.2, ENSMUST00000177173.8
      Conserved Domains (1) summary
      cd11304
      Location:441 → 540
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      107869656..107876880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001122635.1: Suppressed sequence

      Description
      NM_001122635.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

    2. NM_177090.4: Suppressed sequence

      Description
      NM_177090.4: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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