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    LINC01023 long intergenic non-protein coding RNA 1023 [ Homo sapiens (human) ]

    Gene ID: 100652853, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01023provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1023provided by HGNC
    Primary source
    HGNC:HGNC:49004
    See related
    AllianceGenome:HGNC:49004
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HP07349
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    Genomic context

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    Location:
    5q21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (108727825..108728261, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (109230442..109230878, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108063526..108063962, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:107953591-107954236 Neighboring gene ribosomal protein S20 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 1653 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:108007873-108008872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:108017096-108017596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108020945-108021578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108021579-108022211 Neighboring gene MPRA-validated peak5405 silencer Neighboring gene uncharacterized LOC107986440 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108063205-108063786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16221 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16223 Neighboring gene FER tyrosine kinase Neighboring gene RACK1 pseudogene 1 Neighboring gene MPRA-validated peak5407 silencer Neighboring gene LSM2 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis. Bhandari R, et al. Mol Cell Biochem, 2023 Aug. PMID 36576714
    2. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis.
      Title: LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CTC-329H14.4

    Clone Names

    • FLJ44485

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046368.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BF972671

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      108727825..108728261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      109230442..109230878 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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