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    C2h1orf52 similar to human chromosome 1 open reading frame 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499724, updated on 30-Mar-2024

    Summary

    Official Symbol
    C2h1orf52provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 52provided by RGD
    Primary source
    RGD:1560065
    See related
    Ensembl:ENSRNOG00000014857 AllianceGenome:RGD:1560065
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560065
    Summary
    Predicted to be located in nucleoplasm. Orthologous to human C1orf52 (chromosome 1 open reading frame 52). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 86.9), Thymus (RPKM 68.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See C2h1orf52 in Genome Data Viewer
    Location:
    2q44
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (237510974..237520346)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (234853378..234860045)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (251817862..251824784)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene dimethylarginine dimethylaminohydrolase 1 Neighboring gene uncharacterized LOC120100964 Neighboring gene BCL10, immune signaling adaptor Neighboring gene uncharacterized LOC134485992 Neighboring gene RNA, U5E small nuclear 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    UPF0690 protein C1orf52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395135.1NP_001382064.1  UPF0690 protein C1orf52 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AL75, A6HWC6
      Related
      ENSRNOP00000096146.1, ENSRNOT00000113355.1
      Conserved Domains (1) summary
      pfam15559
      Location:34126
      DUF4660; Domain of unknown function (DUF4660)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      237510974..237520346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010063657.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001134616.1: Suppressed sequence

      Description
      NM_001134616.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.