plekhj1 pleckstrin homology domain containing, family J member 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: plekhj1provided by ZNC
Official Full Name: pleckstrin homology domain containing, family J member 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2480
See related: Ensembl:ENSDARG00000025593 AllianceGenome:ZFIN:ZDB-GENE-040426-2480
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:77177
Summary: Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. Orthologous to human PLEKHJ1 (pleckstrin homology domain containing J1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (57848867..57871253)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (57734104..57756490)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc10g05.x1 (e-PCR)
- UniSTS:187738

fe06e06.x1 (e-PCR)
- UniSTS:196029

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in endosome organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in receptor recycling	IBA Inferred from Biological aspect of Ancestor more info
involved_in retrograde transport, endosome to Golgi	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in early endosome	IBA Inferred from Biological aspect of Ancestor more info
is_active_in recycling endosome	IBA Inferred from Biological aspect of Ancestor more info
is_active_in trans-Golgi network	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: pleckstrin homology domain-containing family J member 1

Names: PH domain-containing family J member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213288.1 → NP_998453.1 pleckstrin homology domain-containing family J member 1

See identical proteins and their annotated locations for NP_998453.1

Status: PROVISIONAL

Source sequence(s)

BC065626

UniProtKB/Swiss-Prot

Q6P0G8

Related

ENSDARP00000029972.7, ENSDART00000037279.8

Conserved Domains (2) summary

cd13258
Location:1 → 112

PH_PLEKHJ1; Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain

pfam00169
Location:34 → 108

PH; PH domain