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    Tmem255b transmembrane protein 255B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290877, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Tmem255bprovided by RGD
    Official Full Name
    transmembrane protein 255Bprovided by RGD
    Primary source
    RGD:1566042
    See related
    Ensembl:ENSRNOG00000026336 AllianceGenome:RGD:1566042
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam70b; RGD1566042
    Summary
    Predicted to be integral component of membrane. Orthologous to human TMEM255B (transmembrane protein 255B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 54.0), Lung (RPKM 30.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem255b in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (82759236..82810450, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (76079840..76108179, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (81181095..81209429)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 13 open reading frame 46 Neighboring gene uncharacterized LOC134482420 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene growth arrest specific 6 Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene ATPase H+/K+ transporting subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 255B
    Names
    family with sequence similarity 70, member B
    protein FAM70B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106094.3 → NP_001099564.2  transmembrane protein 255B

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A096MIW1, A0A096MK90, A6IWH2, A6IWH3
      Related
      ENSRNOP00000068423.2, ENSRNOT00000076516.3
      Conserved Domains (1) summary
      pfam14967
      Location:16 → 325
      FAM70; FAM70 protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      82759236..82810450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275259.1 → XP_063131329.1  transmembrane protein 255B isoform X3

    2. XM_063275257.1 → XP_063131327.1  transmembrane protein 255B isoform X2

    3. XM_017600045.3 → XP_017455534.1  transmembrane protein 255B isoform X1

    4. XM_063275260.1 → XP_063131330.1  transmembrane protein 255B isoform X4

    5. XM_039094419.2 → XP_038950347.1  transmembrane protein 255B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:12 → 108
      SF-CC1; splicing factor, CC1-like family
      pfam14967
      Location:101 → 225
      FAM70; FAM70 protein

    6. XM_039094418.2 → XP_038950346.1  transmembrane protein 255B isoform X5

      Conserved Domains (2) summary
      TIGR01622
      Location:12 → 108
      SF-CC1; splicing factor, CC1-like family
      pfam14967
      Location:101 → 244
      FAM70; FAM70 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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