psmc1b proteasome 26S subunit, ATPase 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: psmc1bprovided by ZNC
Official Full Name: proteasome 26S subunit, ATPase 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040625-69
See related: Ensembl:ENSDARG00000043561 AllianceGenome:ZFIN:ZDB-GENE-040625-69
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:86923; wu:fj14c10
Summary: Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome complex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 20

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (16721942..16740955)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (16822359..16841372)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables proteasome-activating activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of proteasome complex	IEA Inferred from Electronic Annotation more info
part_of proteasome regulatory particle, base subcomplex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: proteasome 26S subunit, ATPase 1b

Names: proteasome (prosome, macropain) 26S subunit, ATPase, 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002091.1 → NP_001002091.1 proteasome 26S subunit, ATPase 1b

See identical proteins and their annotated locations for NP_001002091.1

Status: PROVISIONAL

Source sequence(s)

BC071538

UniProtKB/TrEMBL

A0A8M1MZW2, Q6IQ72

Related

ENSDARP00000063949.5, ENSDART00000063950.7

Conserved Domains (3) summary

PTZ00361
Location:1 → 440

PTZ00361; 26 proteosome regulatory subunit 4-like protein; Provisional

pfam00004
Location:222 → 355

AAA; ATPase family associated with various cellular activities (AAA)

pfam16450
Location:108 → 176

Prot_ATP_ID_OB; Proteasomal ATPase OB/ID domain