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    znf207b zinc finger protein 207, b [ Danio rerio (zebrafish) ]

    Gene ID: 100001293, updated on 25-Apr-2024

    Summary

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    Official Symbol
    znf207bprovided by ZNC
    Official Full Name
    zinc finger protein 207, bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7377
    See related
    Ensembl:ENSDARG00000101277 AllianceGenome:ZFIN:ZDB-GENE-030131-7377
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Zfp207; znf207; zgc:56601; wu:fb50g07; wu:fc17a09; wu:fc17a10; wu:fj12e11
    Summary
    Predicted to enable microtubule binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore; mitotic spindle assembly; and mitotic spindle assembly checkpoint signaling. Predicted to be active in kinetochore; nucleus; and spindle matrix. Orthologous to human ZNF207 (zinc finger protein 207). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See znf207b in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (18605644..18618116, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (22134323..22146825, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member T1 Neighboring gene cd7 antigen-like Neighboring gene rhomboid, veinlet-like 3 (Drosophila) Neighboring gene trinucleotide repeat containing adaptor 6C2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC56601, MGC77794

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of spindle microtubules to kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mitotic spindle assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mitotic spindle assembly checkpoint signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in spindle matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BUB3-interacting and GLEBS motif-containing protein ZNF207; BUB3-interacting and GLEBS motif-containing protein ZNF207b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199665.2 → NP_955959.1  BUB3-interacting and GLEBS motif-containing protein ZNF207b

      See identical proteins and their annotated locations for NP_955959.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049335
      UniProtKB/TrEMBL
      Q7ZUB9
      Related
      ENSDARP00000133984.1, ENSDART00000161562.2
      Conserved Domains (2) summary
      PHA03247
      Location:223 → 431
      PHA03247; large tegument protein UL36; Provisional
      sd00017
      Location:13 → 32
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      18605644..18618116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476738.1 → XP_021332413.1  BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B3D8
      Conserved Domains (2) summary
      sd00017
      Location:13 → 32
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl26464
      Location:226 → 465
      Atrophin-1; Atrophin-1 family

    2. XM_009302342.3 → XP_009300617.1  BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B3D8
      Conserved Domains (2) summary
      sd00017
      Location:13 → 32
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl26464
      Location:226 → 465
      Atrophin-1; Atrophin-1 family

    RNA

    1. XR_661889.3 RNA Sequence

    2. XR_661890.3 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394637.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      136049..150032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395252.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      345474..357954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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