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    Cage1 cancer antigen 1 [ Mus musculus (house mouse) ]

    Gene ID: 71213, updated on 5-Mar-2024

    Summary

    Official Symbol
    Cage1provided by MGI
    Official Full Name
    cancer antigen 1provided by MGI
    Primary source
    MGI:MGI:1918463
    See related
    Ensembl:ENSMUSG00000044566 AllianceGenome:MGI:1918463
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ctag3; 4933427I01Rik
    Summary
    Orthologous to human CAGE1 (cancer antigen 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 17.1) and genital fat pad adult (RPKM 0.4) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cage1 in Genome Data Viewer
    Location:
    13 A3.3; 13 17.88 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (38190028..38221115, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (38006052..38037131, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37893604-37893840 Neighboring gene ras responsive element binding protein 1 Neighboring gene predicted gene, 46411 Neighboring gene STARR-positive B cell enhancer ABC_E1461 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37972487-37972670 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37974410-37974611 Neighboring gene STARR-seq mESC enhancer starr_34234 Neighboring gene STARR-positive B cell enhancer ABC_E11541 Neighboring gene STARR-positive B cell enhancer ABC_E7227 Neighboring gene STARR-positive B cell enhancer ABC_E10789 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:38086110-38086293 Neighboring gene predicted gene, 52041 Neighboring gene signal sequence receptor, alpha Neighboring gene STARR-positive B cell enhancer ABC_E9396 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:38129215-38129324 Neighboring gene RIO kinase 1 Neighboring gene STARR-seq mESC enhancer starr_34240 Neighboring gene STARR-seq mESC enhancer starr_34241 Neighboring gene STARR-positive B cell enhancer ABC_E3077 Neighboring gene desmoplakin Neighboring gene small nuclear ribonucleoprotein 48 (U11/U12)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • MGC100323

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    cancer-associated gene 1 protein homolog
    Names
    CAGE-1
    CT3 homolog
    cancer/testis antigen 3 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027724.2NP_082000.2  cancer-associated gene 1 protein homolog

      See identical proteins and their annotated locations for NP_082000.2

      Status: VALIDATED

      Source sequence(s)
      AK016953, AY695827, BC082568, BX519141
      Consensus CDS
      CCDS26460.1
      UniProtKB/Swiss-Prot
      A6X913, Q5IR70, Q640N7
      Related
      ENSMUSP00000074499.5, ENSMUST00000074969.11
      Conserved Domains (2) summary
      COG0419
      Location:363812
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      38190028..38221115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516779.5XP_006516842.1  cancer-associated gene 1 protein homolog isoform X4

      Conserved Domains (2) summary
      COG0419
      Location:308748
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family
    2. XM_006516776.5XP_006516839.1  cancer-associated gene 1 protein homolog isoform X2

      See identical proteins and their annotated locations for XP_006516839.1

      UniProtKB/Swiss-Prot
      A6X913, Q5IR70, Q640N7
      Related
      ENSMUSP00000105862.2, ENSMUST00000110233.8
      Conserved Domains (2) summary
      COG0419
      Location:363812
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family
    3. XM_017315602.3XP_017171091.1  cancer-associated gene 1 protein homolog isoform X1

      Conserved Domains (2) summary
      TIGR02168
      Location:385691
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family
    4. XM_036158166.1XP_036014059.1  cancer-associated gene 1 protein homolog isoform X8

      Conserved Domains (2) summary
      TIGR02168
      Location:74380
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:1215
      CAGE1; Cancer-associated gene protein 1 family
    5. XM_017315603.3XP_017171092.1  cancer-associated gene 1 protein homolog isoform X1

      Conserved Domains (2) summary
      TIGR02168
      Location:385691
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family
    6. XM_017315604.3XP_017171093.1  cancer-associated gene 1 protein homolog isoform X3

      Conserved Domains (2) summary
      TIGR02168
      Location:351657
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:2492
      CAGE1; Cancer-associated gene protein 1 family
    7. XM_030247409.2XP_030103269.1  cancer-associated gene 1 protein homolog isoform X7

      Conserved Domains (1) summary
      pfam15066
      Location:1215
      CAGE1; Cancer-associated gene protein 1 family
    8. XM_017315605.3XP_017171094.1  cancer-associated gene 1 protein homolog isoform X6

      Conserved Domains (2) summary
      TIGR02168
      Location:279585
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:2420
      CAGE1; Cancer-associated gene protein 1 family
    9. XM_030247408.2XP_030103268.1  cancer-associated gene 1 protein homolog isoform X6

      Conserved Domains (2) summary
      TIGR02168
      Location:279585
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:2420
      CAGE1; Cancer-associated gene protein 1 family
    10. XM_030247410.2XP_030103270.1  cancer-associated gene 1 protein homolog isoform X7

      Conserved Domains (1) summary
      pfam15066
      Location:1215
      CAGE1; Cancer-associated gene protein 1 family
    11. XM_011244349.4XP_011242651.2  cancer-associated gene 1 protein homolog isoform X5

      Conserved Domains (2) summary
      TIGR02168
      Location:385691
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15066
      Location:1526
      CAGE1; Cancer-associated gene protein 1 family

    RNA

    1. XR_003950483.2 RNA Sequence

    2. XR_001780816.3 RNA Sequence