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    TTTY14 testis expressed transcript, Y-linked 14 [ Homo sapiens (human) ]

    Gene ID: 83869, updated on 10-Oct-2023

    Summary

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    Official Symbol
    TTTY14provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 14provided by HGNC
    Primary source
    HGNC:HGNC:18495
    See related
    Ensembl:ENSG00000176728 AllianceGenome:HGNC:18495
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TTY14; CYorf14; PRO2834; NCRNA00137; NCRNA00185
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    Yq11.222
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (18872501..19077547, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (19778988..19984049, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21034387..21239433, complement)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene OFD1 pseudogene 7 Y-linked Neighboring gene MT-CYB pseudogene 2 Neighboring gene zinc finger protein 839 pseudogene 1 Neighboring gene CD24 molecule pseudogene 4 Neighboring gene RNA, U6 small nuclear 255, pseudogene Neighboring gene uncharacterized LOC124905306 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. Prakash T, et al. PLoS One, 2010 Oct 12. PMID 20967262, Free PMC Article
    2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422
    3. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    4. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    5. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • testis-specific transcript, Y-linked 14 (non-protein coding)

    Clone Names

    • FLJ32550

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001543.4 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks three exons and its transcription extends past a splice site used in the variant 1, resulting in a shorter transcript.
      Source sequence(s)
      AC007244, AC009235, AI674196

    2. NR_125733.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant:
      Source sequence(s)
      AF119903, DA411985, FY211594, FY213451

    3. NR_125734.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two internal exons and contains an alternate internal exon, resulting in a shorter transcripts, compared to variant 1.
      Source sequence(s)
      AF119903, DA411985, FY211594

    4. NR_125735.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks three internal exons and contains an alternate internal exon, resulting in a shorter transcripts, compared to variant 1.
      Source sequence(s)
      AF119903, BX280014, DA411985
      Related
      ENST00000454875.2

    5. NR_125736.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' terminal exon, lacks two internal exons and contains two alternate internal exons, resulting in a shorter transcripts, compared to variant 1.
      Source sequence(s)
      AF119903, BM750145, HY121109
      Related
      ENST00000670354.1

    6. NR_125737.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' terminal exon, lacks two exons and its transcription extends past a splice site used in the variant 1, resulting in a shorter transcript.
      Source sequence(s)
      AI674196, BM750145
      Related
      ENST00000651286.1

    7. NR_158640.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007244, AC009235
      Related
      ENST00000670243.1

    8. NR_158641.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007244, AC009235

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      18872501..19077547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      19778988..19984049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_031932.1: Suppressed sequence

      Description
      NM_031932.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.

    2. NR_001544.2: Suppressed sequence

      Description
      NR_001544.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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