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    SDCBPP2 syndecan binding protein pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 100129960, updated on 10-Oct-2023

    Summary

    Official Symbol
    SDCBPP2provided by HGNC
    Official Full Name
    syndecan binding protein pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:44686
    See related
    AllianceGenome:HGNC:44686
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    Location:
    8q13.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (69942809..69944286)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (70372395..70373872)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (70855044..70856521)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 675, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:70858967-70859547 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:70869603-70869811 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:70887580-70888508 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70889439-70890367 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70891108-70891790 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19266 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:70907101-70907667 Neighboring gene SUMO2 pseudogene 20 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:70919765-70920266 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:70923018-70923212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:70973261-70973851 Neighboring gene PR/SET domain 14 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70982981-70983710

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_030275.2 

      Range
      89..1566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      69942809..69944286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      70372395..70373872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)