FAM89A family with sequence similarity 89 member A [Homo sapiens (human)] - Gene

Summary

Official Symbol: FAM89Aprovided by HGNC
Official Full Name: family with sequence similarity 89 member Aprovided by HGNC
Primary source: HGNC:HGNC:25057
See related: Ensembl:ENSG00000182118 AllianceGenome:HGNC:25057
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: C1orf153
Expression: Broad expression in fat (RPKM 41.2), placenta (RPKM 38.9) and 17 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 1q42.2

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	1	NC_000001.11 (231018958..231040254, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	1	NC_060925.1 (230399853..230421165, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	1	NC_000001.10 (231154704..231176000, complement)

Chromosome 1 - NC_000001.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Transcriptome-wide association study reveals two genes that influence mismatch negativity.
Title: Transcriptome-wide association study reveals two genes that influence mismatch negativity.
A qPCR expression assay of IFI44L gene differentiates viral from bacterial infections in febrile children.
Title: A qPCR expression assay of IFI44L gene differentiates viral from bacterial infections in febrile children.

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

SHGC-76520 (e-PCR)
- UniSTS:82705

RH64743 (e-PCR)
- UniSTS:91457

RH64880 (e-PCR)
- UniSTS:87623

Cda0fc06 (e-PCR)
- UniSTS:27995

RH65312 (e-PCR)
- UniSTS:92518

D1S225 (e-PCR), detects polymorphism
- UniSTS:44721

D1S225 (e-PCR), detects polymorphism
- UniSTS:73432

General protein information

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Preferred Names: protein FAM89A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.