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    LOC441052 uncharacterized LOC441052 [ Homo sapiens (human) ]

    Gene ID: 441052, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC441052
    Gene description
    uncharacterized LOC441052
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC441052 in Genome Data Viewer
    Location:
    4q34.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (171812138..171813607, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (175164412..175165881, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (172733289..172734758, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377535 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15800 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15801 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22151 Neighboring gene long intergenic non-protein coding RNA 2174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22152 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:172823942-172824554 Neighboring gene polypeptide N-acetylgalactosaminyltransferase like 6 Neighboring gene Sharpr-MPRA regulatory region 892 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:172914347-172914881 Neighboring gene uncharacterized LOC124900811 Neighboring gene ubiquitin conjugating enzyme E2 N pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article
    2. A "double adaptor" method for improved shotgun library construction. Andersson B, et al. Anal Biochem, 1996 Apr 5. PMID 8619474
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134656.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025561, AF131741, DA181879

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      171812138..171813607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      175164412..175165881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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