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    Ccdc83 coiled-coil domain containing 83 [ Mus musculus (house mouse) ]

    Gene ID: 75338, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ccdc83provided by MGI
    Official Full Name
    coiled-coil domain containing 83provided by MGI
    Primary source
    MGI:MGI:1918255
    See related
    Ensembl:ENSMUSG00000030617 AllianceGenome:MGI:1918255
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930549K11Rik; 4930554C01Rik; 4932423M01Rik
    Summary
    Orthologous to human CCDC83 (coiled-coil domain containing 83). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 4.4) See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc83 in Genome Data Viewer
    Location:
    7 D3; 7 50.48 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (89872641..89914640, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (90223500..90265432, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310010J17 gene Neighboring gene basic transcription factor 3, pseudogene 5 Neighboring gene STARR-positive B cell enhancer ABC_E4948 Neighboring gene STARR-positive B cell enhancer ABC_E3731 Neighboring gene phosphatidylinositol binding clathrin assembly protein Neighboring gene synaptotagmin-like 2 Neighboring gene STARR-seq mESC enhancer starr_19508 Neighboring gene STARR-seq mESC enhancer starr_19509 Neighboring gene STARR-seq mESC enhancer starr_19510 Neighboring gene STARR-seq mESC enhancer starr_19511 Neighboring gene coiled-coil domain containing 89

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 83

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029256.3 → NP_083532.1  coiled-coil domain-containing protein 83 isoform 2

      See identical proteins and their annotated locations for NP_083532.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC158781
      Consensus CDS
      CCDS21446.1
      UniProtKB/Swiss-Prot
      Q8CEQ7, Q9D4V3, Q9D4W3
      UniProtKB/TrEMBL
      D3YUZ1
      Related
      ENSMUSP00000047758.2, ENSMUST00000040413.2
      Conserved Domains (1) summary
      cl19219
      Location:43 → 133
      DUF342; Protein of unknown function (DUF342)

    2. NM_183293.1 → NP_899116.1  coiled-coil domain-containing protein 83 isoform 1

      See identical proteins and their annotated locations for NP_899116.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC158781, AK016114, AK016535
      Consensus CDS
      CCDS57561.1
      UniProtKB/TrEMBL
      D3YUZ0
      Related
      ENSMUSP00000102839.2, ENSMUST00000107221.9
      Conserved Domains (2) summary
      COG1196
      Location:34 → 296
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK00409
      Location:34 → 135
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed

    RNA

    1. NR_111924.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction at the 5' end of an exon and differs in the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC158781, AK016114, BC145034

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      89872641..89914640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508277.5 → XP_006508340.1  coiled-coil domain-containing protein 83 isoform X1

      See identical proteins and their annotated locations for XP_006508340.1

      UniProtKB/TrEMBL
      D3YUZ0
      Conserved Domains (2) summary
      COG1196
      Location:34 → 296
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK00409
      Location:34 → 135
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D4V3.1 GenPept UniProtKB/Swiss-Prot:Q9D4V3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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