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    LINC00437 long intergenic non-protein coding RNA 437 [ Homo sapiens (human) ]

    Gene ID: 101929121, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC00437provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 437provided by HGNC
    Primary source
    HGNC:HGNC:42772
    See related
    AllianceGenome:HGNC:42772
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00021639
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00437 in Genome Data Viewer
    Location:
    13q13.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (38532000..38686675, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (37748843..37903387, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (39106137..39260812, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2334 Neighboring gene long intergenic non-protein coding RNA 571 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7595 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:38924325-38924539 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38938261-38938769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5273 Neighboring gene ubiquitin fold modifier 1 Neighboring gene uncharacterized LOC105370167 Neighboring gene Sharpr-MPRA regulatory region 5265 Neighboring gene long intergenic non-protein coding RNA 366 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:39198858-39199419 Neighboring gene peroxiredoxin 3 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 9586 Neighboring gene FRAS1 related extracellular matrix 2 Neighboring gene NANOG hESC enhancer GRCh37_chr13:39378565-39379066 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7596 Neighboring gene RNA, U6 small nuclear 56, pseudogene Neighboring gene FREM2 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126377.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017111, AL441986

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      38532000..38686675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      37748843..37903387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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