U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COX6A1P1 COX6A1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 1338, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    COX6A1P1provided by HGNC
    Official Full Name
    COX6A1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:2278
    See related
    AllianceGenome:HGNC:2278
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    COX6A1P
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COX6A1P1 in Genome Data Viewer
    Location:
    1p31.1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (80495889..80496422)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (80333394..80333927)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (80961574..80962107)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene high mobility group box 1 pseudogene 18 Neighboring gene NANOG hESC enhancer GRCh37_chr1:80851257-80851786 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 64 Neighboring gene long intergenic non-protein coding RNA 1781 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:81188561-81189168 Neighboring gene MT-ND2 pseudogene 30

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Human COX6A1 gene: promoter analysis, cDNA isolation and expression in the monkey brain. Wong-Riley M, et al. Gene, 2000 Apr 18. PMID 10773445
    2. Assignment of COX6A1 to 6p21 and a pseudogene (COX6A1P) to 1p31.1 by in situ hybridization and somatic cell hybrids. Hey Y, et al. Cytogenet Cell Genet, 1997. PMID 9284905
    3. Structure of the human gene (COX6A2) for the heart/muscle isoform of cytochrome c oxidase subunit VIa and its chromosomal location in humans, mice, and cattle. Bachman NJ, et al. Genomics, 1997 May 15. PMID 9177785

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • cytochrome c oxidase subunit 6A1 pseudogene 1
    • cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_001105.3 

      Range
      101..634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      80495889..80496422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      80333394..80333927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases