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    Lrrc30 leucine rich repeat containing 30 [ Mus musculus (house mouse) ]

    Gene ID: 240131, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Lrrc30provided by MGI
    Official Full Name
    leucine rich repeat containing 30provided by MGI
    Primary source
    MGI:MGI:2685172
    See related
    Ensembl:ENSMUSG00000073375 AllianceGenome:MGI:2685172
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm326
    Summary
    Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Orthologous to human LRRC30 (leucine rich repeat containing 30). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Lrrc30 in Genome Data Viewer
    Location:
    17 E1.1; 17 38.8 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (67937960..67939718, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (67630965..67632723, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36152 Neighboring gene STARR-seq mESC enhancer starr_43094 Neighboring gene predicted gene, 36201 Neighboring gene STARR-seq mESC enhancer starr_43095 Neighboring gene STARR-seq mESC enhancer starr_43096 Neighboring gene predicted gene, 52321 Neighboring gene laminin, alpha 1 Neighboring gene Rho GTPase activating protein 28 Neighboring gene STARR-seq mESC enhancer starr_43107

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033340.3 → NP_001028512.2  leucine-rich repeat-containing protein 30

      See identical proteins and their annotated locations for NP_001028512.2

      Status: VALIDATED

      Source sequence(s)
      AK137598, CT030155
      Consensus CDS
      CCDS28949.1
      UniProtKB/Swiss-Prot
      Q3UV48
      UniProtKB/TrEMBL
      B2RVX0
      Related
      ENSMUSP00000094893.3, ENSMUST00000097290.4
      Conserved Domains (3) summary
      sd00033
      Location:72 → 94
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:140 → 178
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:117 → 174
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      67937960..67939718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3UV48.1 GenPept UniProtKB/Swiss-Prot:Q3UV48

    Gene LinkOut

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