LINC00607 long intergenic non-protein coding RNA 607 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINC00607provided by HGNC
Official Full Name: long intergenic non-protein coding RNA 607provided by HGNC
Primary source: HGNC:HGNC:43944
See related: Ensembl:ENSG00000235770 AllianceGenome:HGNC:43944
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: 2q35

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	2	NC_000002.12 (215611563..215843536, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	2	NC_060926.1 (216097003..216328916, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	2	NC_000002.11 (216476286..216708259, complement)

Chromosome 2 - NC_000002.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

MYC-activated LINC00607 promotes hepatocellular carcinoma progression by regulating the miR-584-3p/ROCK1 axis.
Title: MYC-activated LINC00607 promotes hepatocellular carcinoma progression by regulating the miR-584-3p/ROCK1 axis.
The endothelial-enriched lncRNA LINC00607 mediates angiogenic function.
Title: The endothelial-enriched lncRNA LINC00607 mediates angiogenic function.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of smoking behaviours among Bangladeshi adults. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

G63067 (e-PCR)
- UniSTS:140042

STS-T95030 (e-PCR)
- UniSTS:14375

SHGC-111225 (e-PCR)
- UniSTS:168236

STS-AA035344 (e-PCR)
- UniSTS:42540

D8S2279 (e-PCR)
- UniSTS:473907

D2S2361 (e-PCR), detects polymorphism
- UniSTS:38714

SHGC-33388 (e-PCR)
- UniSTS:83046

RH78890 (e-PCR)
- UniSTS:30063

SHGC-144248 (e-PCR)
- UniSTS:174197

SHGC-143565 (e-PCR)
- UniSTS:171957

G60197 (e-PCR)
- UniSTS:137456

G32917 (e-PCR)
- UniSTS:117496

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.