ATP6V0E2-AS1 ATP6V0E2 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: ATP6V0E2-AS1provided by HGNC
Official Full Name: ATP6V0E2 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:44180
See related: Ensembl:ENSG00000204934 AllianceGenome:HGNC:44180
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Broad expression in brain (RPKM 2.0), thyroid (RPKM 1.8) and 22 other tissues See more
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Genomic context

Location:: 7q36.1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	7	NC_000007.14 (149867694..149873862, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	7	NC_060931.1 (151049806..151055969, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	7	NC_000007.13 (149564783..149570951, complement)

Chromosome 7 - NC_000007.14 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

GDB:1318310 (e-PCR)
- UniSTS:74819

D7S2075E (e-PCR)
- UniSTS:18258

RH48950 (e-PCR)
- UniSTS:72793

RH92234 (e-PCR)
- UniSTS:84069

WIAF-1599 (e-PCR)
- UniSTS:37228

RH65674 (e-PCR)
- UniSTS:55263

RH121117 (e-PCR)
- UniSTS:134112

D7S2637 (e-PCR)
- UniSTS:49647

Other Names

ATP6V0E2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_027040.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AW452405, BC023225, DA083383

Related

ENST00000461019.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000007.14 Reference GRCh38.p14 Primary Assembly

Range

149867694..149873862 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

NC_060931.1 Alternate T2T-CHM13v2.0

Range

151049806..151055969 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001008745.1: Suppressed sequence

Description

NM_001008745.1: This RefSeq was permanently suppressed because currently sufficient data to support the encoded protein do not exist and the transcript is a nonsense-mediated mRNA decay (NMD) candidate.