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    PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 [ Homo sapiens (human) ]

    Gene ID: 9088, updated on 2-May-2024

    Summary

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    Official Symbol
    PKMYT1provided by HGNC
    Official Full Name
    protein kinase, membrane associated tyrosine/threonine 1provided by HGNC
    Primary source
    HGNC:HGNC:29650
    See related
    Ensembl:ENSG00000127564 MIM:602474; AllianceGenome:HGNC:29650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MYT1; PPP1R126
    Summary
    This gene encodes a member of the serine/threonine protein kinase family. The encoded protein is a membrane-associated kinase that negatively regulates the G2/M transition of the cell cycle by phosphorylating and inactivating cyclin-dependent kinase 1. The activity of the encoded protein is regulated by polo-like kinase 1. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]
    Expression
    Broad expression in testis (RPKM 14.8), bone marrow (RPKM 10.4) and 16 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    Location:
    16p13.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (2972808..2980446, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (2999487..3007174, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3022809..3030447, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene FLYWCH-type zinc finger 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2988192-2988805 Neighboring gene uncharacterized LOC105371055 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3005307-3006228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3006229-3007148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10287 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3011513-3012510 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3012511-3013508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7088 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7089 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3015093-3016052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3018331-3019320 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7095 Neighboring gene kringle containing transmembrane protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3021603-3022419 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3029137-3030013 Neighboring gene progestin and adipoQ receptor family member 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3030014-3030889 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3030890-3031766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3032811-3033312 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7098 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:3033737-3033923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3037455-3038406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3038407-3039356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3043721-3044222 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3045542-3046514 Neighboring gene glycine rich extracellular protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3048182-3048682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3048683-3049183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3051481-3052017 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:3053764-3054722 Neighboring gene Sharpr-MPRA regulatory region 8596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3057599-3058558 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:3058559-3059516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3061783-3062608 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:3064184-3064351 Neighboring gene claudin 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Knockdown of PKMYT1 is associated with autophagy inhibition and apoptosis induction and suppresses tumor progression in hepatocellular carcinoma. Wu F, et al. Biochem Biophys Res Commun, 2023 Jan 15. PMID 36512849
    2. PKMYT1 inhibits lung adenocarcinoma progression by abrogating AKT1 activity. Wang S, et al. Cell Oncol (Dordr), 2023 Feb. PMID 36350496
    3. PKMYT1, exacerbating the progression of clear cell renal cell carcinoma, is implied as a biomarker for the diagnosis and prognosis. Chen J, et al. Aging (Albany NY), 2021 Dec 27. PMID 34959223, Free PMC Article
    4. Overexpression of PKMYT1 Facilitates Tumor Development and Is Correlated with Poor Prognosis in Clear Cell Renal Cell Carcinoma. Chen P, et al. Med Sci Monit, 2020 Oct 7. PMID 33024069, Free PMC Article
    5. PKMYT1 is associated with prostate cancer malignancy and may serve as a therapeutic target. Wang J, et al. Gene, 2020 Jun 20. PMID 32234541

    See all (71) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PKMYT1 Promotes Epithelial-Mesenchymal Transition Process in Triple-Negative Breast Cancer by Activating Notch Signaling.
      Title: PKMYT1 Promotes Epithelial-Mesenchymal Transition Process in Triple-Negative Breast Cancer by Activating Notch Signaling.
    2. PKMYT1: A Potential Target for CCNE1 Amplificated Colorectal Tumors.
      Title: PKMYT1: A Potential Target for CCNE1 Amplificated Colorectal Tumors.
    3. ELF3 promotes gemcitabine resistance through PKMYT1/CDK1 signaling pathway in gallbladder cancer.
      Title: ELF3 promotes gemcitabine resistance through PKMYT1/CDK1 signaling pathway in gallbladder cancer.
    4. PKMYT1 inhibits lung adenocarcinoma progression by abrogating AKT1 activity.
      Title: PKMYT1 inhibits lung adenocarcinoma progression by abrogating AKT1 activity.
    5. Knockdown of PKMYT1 is associated with autophagy inhibition and apoptosis induction and suppresses tumor progression in hepatocellular carcinoma.
      Title: Knockdown of PKMYT1 is associated with autophagy inhibition and apoptosis induction and suppresses tumor progression in hepatocellular carcinoma.
    6. KDM2B mediates the Wnt/beta-catenin pathway through transcriptional activation of PKMYT1 via microRNA-let-7b-5p/EZH2 to affect the development of non-small cell lung cancer.
      Title: KDM2B mediates the Wnt/β-catenin pathway through transcriptional activation of PKMYT1 via microRNA-let-7b-5p/EZH2 to affect the development of non-small cell lung cancer.
    7. CCNE1 amplification is synthetic lethal with PKMYT1 kinase inhibition.
      Title: CCNE1 amplification is synthetic lethal with PKMYT1 kinase inhibition.
    8. Demethylase ALKBH5 suppresses invasion of gastric cancer via PKMYT1 m6A modification.
      Title: Demethylase ALKBH5 suppresses invasion of gastric cancer via PKMYT1 m6A modification.
    9. LncRNA PKMYT1AR promotes cancer stem cell maintenance in non-small cell lung cancer via activating Wnt signaling pathway.
      Title: LncRNA PKMYT1AR promotes cancer stem cell maintenance in non-small cell lung cancer via activating Wnt signaling pathway.
    10. PKMYT1, exacerbating the progression of clear cell renal cell carcinoma, is implied as a biomarker for the diagnosis and prognosis.
      Title: PKMYT1, exacerbating the progression of clear cell renal cell carcinoma, is implied as a biomarker for the diagnosis and prognosis.
    Submit: New GeneRIF Correction See all GeneRIFs (24)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide association study of the metabolic syndrome in Indian Asian men.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ20093, DKFZp547K1610

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity TAS
    Traceable Author Statement
    more info
    		  
    Process Evidence Code Pubs
    involved_in G2/M transition of mitotic cell cycle TAS
    Traceable Author Statement
    more info
    		  
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mitotic cell cycle TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in negative regulation of G2/M transition of mitotic cell cycle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of G2/MI transition of meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of mitotic nuclear division TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		  
    located_in endoplasmic reticulum TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane HDA PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
    Names
    myt1 kinase
    protein phosphatase 1, regulatory subunit 126
    NP_001245379.1
    NP_001245380.1
    NP_004194.3
    NP_872629.1
    XP_011521036.1
    XP_011521037.1
    XP_024306258.1
    XP_047290824.1
    XP_047290825.1
    XP_047290826.1
    XP_047290827.1
    XP_047290828.1
    XP_047290829.1
    XP_047290830.1
    XP_054170295.1
    XP_054170296.1
    XP_054170297.1
    XP_054170298.1
    XP_054170299.1
    XP_054170300.1
    XP_054170301.1
    XP_054170302.1
    XP_054170303.1
    XP_054170304.1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001258450.2 → NP_001245379.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform 3

      See identical proteins and their annotated locations for NP_001245379.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in the 5' coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
      Source sequence(s)
      AK301926, BQ017689, DB111506
      Consensus CDS
      CCDS58415.1
      UniProtKB/TrEMBL
      Q0IJ49
      Related
      ENSP00000460868.1, ENST00000574730.5
      Conserved Domains (2) summary
      smart00220
      Location:41 → 288
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14050
      Location:39 → 288
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    2. NM_001258451.2 → NP_001245380.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform 4

      See identical proteins and their annotated locations for NP_001245380.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (4) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK097642, AK301926, BQ017689, DB111506
      Consensus CDS
      CCDS58414.1
      UniProtKB/TrEMBL
      Q0IJ49
      Related
      ENSP00000458943.1, ENST00000574385.5
      Conserved Domains (2) summary
      smart00220
      Location:101 → 348
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14050
      Location:99 → 348
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    3. NM_004203.5 → NP_004194.3  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform 1

      See identical proteins and their annotated locations for NP_004194.3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      BC121161, BQ017689, DB009060
      Consensus CDS
      CCDS10486.1
      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640
      UniProtKB/TrEMBL
      Q0IJ49
      Related
      ENSP00000262300.8, ENST00000262300.13
      Conserved Domains (1) summary
      cd14050
      Location:108 → 357
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    4. NM_182687.3 → NP_872629.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform 2

      See identical proteins and their annotated locations for NP_872629.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK098452, BQ017689, DB009060
      Consensus CDS
      CCDS45391.1
      UniProtKB/TrEMBL
      A6NHV6, B4DG26
      Related
      ENSP00000397739.2, ENST00000440027.6
      Conserved Domains (2) summary
      smart00220
      Location:110 → 357
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14050
      Location:108 → 357
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      2972808..2980446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011522735.4 → XP_011521037.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X3

      See identical proteins and their annotated locations for XP_011521037.1

      UniProtKB/TrEMBL
      Q0IJ49
      Related
      ENSP00000459123.1, ENST00000573944.5
      Conserved Domains (2) summary
      smart00220
      Location:101 → 348
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14050
      Location:99 → 348
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    2. XM_047434868.1 → XP_047290824.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    3. XM_011522734.4 → XP_011521036.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      See identical proteins and their annotated locations for XP_011521036.1

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640
      UniProtKB/TrEMBL
      Q0IJ49
      Conserved Domains (1) summary
      cd14050
      Location:108 → 357
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    4. XM_047434869.1 → XP_047290825.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    5. XM_047434873.1 → XP_047290829.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    6. XM_047434871.1 → XP_047290827.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    7. XM_047434874.1 → XP_047290830.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    8. XM_047434872.1 → XP_047290828.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    9. XM_024450490.2 → XP_024306258.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640
      UniProtKB/TrEMBL
      Q0IJ49
      Conserved Domains (1) summary
      cd14050
      Location:108 → 357
      PKc_Myt1; Catalytic domain of the Dual-specificity protein kinase, Myt1

    10. XM_047434870.1 → XP_047290826.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      2999487..3007174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054314328.1 → XP_054170303.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    2. XM_054314322.1 → XP_054170297.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    3. XM_054314329.1 → XP_054170304.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X3

    4. XM_054314320.1 → XP_054170295.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    5. XM_054314325.1 → XP_054170300.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    6. XM_054314321.1 → XP_054170296.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    7. XM_054314326.1 → XP_054170301.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    8. XM_054314323.1 → XP_054170298.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    9. XM_054314327.1 → XP_054170302.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X2

      UniProtKB/Swiss-Prot
      B3KUN8, B4DXD4, D3DUA4, F8W164, I3L1V2, O14731, Q7LE24, Q8TCM9, Q99640

    10. XM_054314324.1 → XP_054170299.1  membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q99640.1 GenPept UniProtKB/Swiss-Prot:Q99640

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