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    Tac4 tachykinin 4 [ Mus musculus (house mouse) ]

    Gene ID: 93670, updated on 9-May-2024

    Summary

    Official Symbol
    Tac4provided by MGI
    Official Full Name
    tachykinin 4provided by MGI
    Primary source
    MGI:MGI:1931130
    See related
    Ensembl:ENSMUSG00000020872 AllianceGenome:MGI:1931130
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PPT-C
    Summary
    Enables receptor ligand activity; substance K receptor binding activity; and substance P receptor binding activity. Involved in positive regulation of cytosolic calcium ion concentration. Acts upstream of or within positive regulation of saliva secretion and tachykinin receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; mammary gland; skin; spleen; and stomach. Orthologous to human TAC4 (tachykinin precursor 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Genomic context

    Location:
    11 D; 11 59.01 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (95152355..95160091)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (95261529..95269265)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:95045922-95046123 Neighboring gene predicted gene, 53255 Neighboring gene STARR-seq mESC enhancer starr_30493 Neighboring gene predicted gene 11515 Neighboring gene K(lysine) acetyltransferase 7 Neighboring gene STARR-positive B cell enhancer ABC_E9370 Neighboring gene STARR-positive B cell enhancer ABC_E9840 Neighboring gene STARR-positive B cell enhancer ABC_E376 Neighboring gene STARR-positive B cell enhancer ABC_E1841 Neighboring gene predicted gene 11520

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables receptor ligand activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables receptor ligand activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables signaling receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables substance K receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables substance K receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables substance P receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables substance P receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables substance P receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in detection of temperature stimulus involved in sensory perception of pain ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in inflammatory response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within mast cell degranulation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of sensory perception of pain ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of systemic arterial blood pressure ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cytosolic calcium ion concentration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of cytosolic calcium ion concentration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cytosolic calcium ion concentration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of saliva secretion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of sensory perception of pain ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of blood pressure IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of sensory perception of pain ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in tachykinin receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within tachykinin receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in tachykinin receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in tachykinin receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    tachykinin-4
    Names
    hemokinin I (HK-1)
    preprotachykinin-C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053093.2NP_444323.1  tachykinin-4 preproprotein

      See identical proteins and their annotated locations for NP_444323.1

      Status: VALIDATED

      Source sequence(s)
      AF235035, AW489379
      Consensus CDS
      CCDS25274.1
      UniProtKB/Swiss-Prot
      Q99N14
      Related
      ENSMUSP00000021242.5, ENSMUST00000021242.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      95152355..95160091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)