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    Dnajc5b DnaJ heat shock protein family (Hsp40) member C5 beta [ Mus musculus (house mouse) ]

    Gene ID: 66326, updated on 5-Apr-2024

    Summary

    Official Symbol
    Dnajc5bprovided by MGI
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C5 betaprovided by MGI
    Primary source
    MGI:MGI:1913576
    See related
    Ensembl:ENSMUSG00000027606 AllianceGenome:MGI:1913576
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700008A05Rik
    Summary
    Predicted to be located in membrane. Orthologous to human DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 67.1) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    3 A2; 3 5.55 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (19562755..19665026)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (19508591..19610862)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr3:19250042-19250343 Neighboring gene predicted gene, 52602 Neighboring gene predicted gene, 42188 Neighboring gene STARR-seq mESC enhancer starr_07092 Neighboring gene STARR-seq mESC enhancer starr_07093 Neighboring gene STARR-positive B cell enhancer mm9_chr3:19330305-19330606 Neighboring gene STARR-seq mESC enhancer starr_07094 Neighboring gene STARR-seq mESC enhancer starr_07095 Neighboring gene STARR-seq mESC enhancer starr_07096 Neighboring gene predicted gene, 23330 Neighboring gene STARR-seq mESC enhancer starr_07097 Neighboring gene B-cell leukemia/lymphoma 10 pseudogene Neighboring gene nuclear encoded tRNA arginine 3 (anticodon ACG) Neighboring gene nuclear encoded tRNA tyrosine 1 (anticodon GTA)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (3) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 5B
    Names
    CSP-beta
    DnaJ (Hsp40) homolog, subfamily C, member 5 beta
    beta cysteine string protein
    beta-CSP
    cysteine string protein beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163536.2NP_001157008.1  dnaJ homolog subfamily C member 5B

      See identical proteins and their annotated locations for NP_001157008.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AC141209, AC157815
      Consensus CDS
      CCDS17257.1
      UniProtKB/Swiss-Prot
      Q810R9, Q9CQ94
      Related
      ENSMUSP00000112849.2, ENSMUST00000118968.8
      Conserved Domains (1) summary
      COG0484
      Location:1988
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    2. NM_001163537.2NP_001157009.1  dnaJ homolog subfamily C member 5B

      See identical proteins and their annotated locations for NP_001157009.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
      Source sequence(s)
      AC141209, AC157815
      Consensus CDS
      CCDS17257.1
      UniProtKB/Swiss-Prot
      Q810R9, Q9CQ94
      Related
      ENSMUSP00000127515.2, ENSMUST00000165693.2
      Conserved Domains (1) summary
      COG0484
      Location:1988
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    3. NM_025489.4NP_079765.3  dnaJ homolog subfamily C member 5B

      See identical proteins and their annotated locations for NP_079765.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AC141209, AC157815
      Consensus CDS
      CCDS17257.1
      UniProtKB/Swiss-Prot
      Q810R9, Q9CQ94
      Related
      ENSMUSP00000029132.5, ENSMUST00000029132.11
      Conserved Domains (1) summary
      COG0484
      Location:1988
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      19562755..19665026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535515.1XP_006535578.1  dnaJ homolog subfamily C member 5B isoform X1

      UniProtKB/Swiss-Prot
      Q810R9, Q9CQ94
      Conserved Domains (1) summary
      COG0484
      Location:1988
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    2. XM_006535516.1XP_006535579.1  dnaJ homolog subfamily C member 5B isoform X1

      See identical proteins and their annotated locations for XP_006535579.1

      UniProtKB/Swiss-Prot
      Q810R9, Q9CQ94
      Conserved Domains (1) summary
      COG0484
      Location:1988
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]