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    CNTNAP3P2 CNTNAP3 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 643827, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CNTNAP3P2provided by HGNC
    Official Full Name
    CNTNAP3 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:49589
    See related
    AllianceGenome:HGNC:49589
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in esophagus (RPKM 4.5), skin (RPKM 3.4) and 22 other tissues See more
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    Genomic context

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    See CNTNAP3P2 in Genome Data Viewer
    Location:
    9q21.11
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (67059460..67297156)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (78831566..79069504)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (65576955..65665655)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene SPATA31 subfamily A member 3 Neighboring gene uncharacterized LOC105379450 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:40673375-40673944 Neighboring gene USP12 pseudogene 3 Neighboring gene NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene Neighboring gene RNA, 7SL, cytoplasmic 422, pseudogene Neighboring gene RNA binding motif protein 17 pseudogene 2 Neighboring gene vomeronasal 2 receptor 7 pseudogene Neighboring gene uncharacterized LOC101927602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CASPR3 pseudogene
    • contactin associated protein-like 3 pseudogene 2

    Clone Names

    • FLJ14195, FLJ30083

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_111893.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162233, BX005195

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      67059460..67297156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      78831566..79069504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_012895.1: Suppressed sequence

      Description
      NG_012895.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed

    2. NG_027506.1: Suppressed sequence

      Description
      NG_027506.1: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.

    3. NM_001012280.1: Suppressed sequence

      Description
      NM_001012280.1: This RefSeq was permanently suppressed because the locus is now thought to be a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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