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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_028721.3 → NP_082997.3 nephrocystin-3 isoform a
See identical proteins and their annotated locations for NP_082997.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform a).
- Source sequence(s)
-
AK133217, AK173327, BM219539
- Consensus CDS
-
CCDS40749.1
- UniProtKB/Swiss-Prot
- D6RHB4, E9Q5X1, E9QN29, Q69Z39, Q7TNH6, Q8C798, Q8C7Z3, Q9D6D1
- UniProtKB/TrEMBL
-
H9KV07
- Related
- ENSMUSP00000035167.9, ENSMUST00000035167.15
- Conserved Domains (7) summary
-
- sd00006
Location:1130 → 1158
- TPR; TPR repeat [structural motif]
- pfam03938
Location:120 → 202
- OmpH; Outer membrane protein (OmpH-like)
- pfam04871
Location:113 → 199
- Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
- pfam12711
Location:76 → 145
- Kinesin-relat_1; Kinesin motor
- pfam13374
Location:1130 → 1169
- TPR_10; Tetratricopeptide repeat
- pfam13424
Location:1085 → 1162
- TPR_12; Tetratricopeptide repeat
- cl21455
Location:502 → 570
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
NM_172460.1 → NP_766048.1 nephrocystin-3 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses a different splice site in the 5' CDS and lacks all of the downstream CDS, compared to variant 1. The resulting protein (isoform b) is much shorter and has a distinct C-terminus when it is compared to isoform a.
- Source sequence(s)
-
AK052281, AK133217
- UniProtKB/Swiss-Prot
-
Q7TNH6
- Related
-
ENSMUST00000191919.2
- Conserved Domains (3) summary
-
- pfam03938
Location:120 → 202
- OmpH; Outer membrane protein (OmpH-like)
- pfam04871
Location:113 → 199
- Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
- pfam12711
Location:76 → 145
- Kinesin-relat_1; Kinesin motor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000075.7 Reference GRCm39 C57BL/6J
- Range
-
103879743..103921010
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)