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    Gpank1 G patch domain and ankyrin repeats 1 [ Mus musculus (house mouse) ]

    Gene ID: 81845, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Gpank1provided by MGI
    Official Full Name
    G patch domain and ankyrin repeats 1provided by MGI
    Primary source
    MGI:MGI:2148975
    See related
    Ensembl:ENSMUSG00000092417 AllianceGenome:MGI:2148975
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G5; Bat4; Bat-4; D17H6S54E
    Summary
    Predicted to enable nucleic acid binding activity. Is expressed in blastocyst; central nervous system; gut; male reproductive gland or organ; and sensory organ. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 21.0), spleen adult (RPKM 7.3) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gpank1 in Genome Data Viewer
    Location:
    17 B1; 17 18.59 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35340472..35343791)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35121448..35124815)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member G5C Neighboring gene lymphocyte antigen 6 family member G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene predicted gene 20522 Neighboring gene DNA segment, Chr 17, human D6S53E Neighboring gene apolipoprotein M

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. New microsatellite size variants as markers for a cross-over hotspot in the C4-H-2D region. Snoek M, et al. Mamm Genome, 1994 Mar. PMID 8199408
    2. Localization of the casein kinase II beta-subunit gene within the mouse H-2 complex class III region and comparison of expression with Bat genes. Lanning D, et al. Mamm Genome, 1997 Jul. PMID 9196000
    3. Protein NPM3 interacts with the multifunctional nucleolar protein B23/nucleophosmin and inhibits ribosome biogenesis. Huang N, et al. J Biol Chem, 2005 Feb 18. PMID 15596447
    4. PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Lafuse WP, et al. Immunogenetics, 1992. PMID 1351875
    5. A physical map of the mouse H2 Bat5/Db interval. Dagenais SL, et al. Mamm Genome, 1997 Jan. PMID 9021146

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain and ankyrin repeat-containing protein 1
    Names
    G patch domain and ankyrin repeats-containing protein 1
    HLA-B associated transcript 4
    protein BAT4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128597.2 → NP_001122069.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001122069.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has a distinct 5' UTR and lacks a segment of the 5' coding region, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      CR974444
      Consensus CDS
      CCDS50084.1
      UniProtKB/TrEMBL
      Q6PES3
      Related
      ENSMUSP00000133240.3, ENSMUST00000165306.3
      Conserved Domains (3) summary
      sd00045
      Location:99 → 131
      ANK; ANK repeat [structural motif]
      pfam01585
      Location:248 → 290
      G-patch; G-patch domain
      pfam12796
      Location:99 → 186
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001410200.1 → NP_001397129.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR974444
      UniProtKB/TrEMBL
      Q6PES3

    3. NM_001410201.1 → NP_001397130.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR974444
      UniProtKB/TrEMBL
      Q6PES3

    4. NM_001410202.1 → NP_001397131.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR974444
      UniProtKB/TrEMBL
      Q6PES3

    5. NM_001410203.1 → NP_001397132.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR974444
      UniProtKB/TrEMBL
      Q6PES3

    6. NM_001410204.1 → NP_001397133.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR974444
      UniProtKB/TrEMBL
      Q6PES3

    7. NM_032460.2 → NP_115849.2  G patch domain and ankyrin repeat-containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_115849.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      BC120637, BY606764
      Consensus CDS
      CCDS28685.1
      UniProtKB/Swiss-Prot
      Q0VBG8, Q61858, Q9R065
      Related
      ENSMUSP00000056646.9, ENSMUST00000052167.9
      Conserved Domains (3) summary
      sd00045
      Location:122 → 154
      ANK; ANK repeat [structural motif]
      pfam01585
      Location:271 → 313
      G-patch; G-patch domain
      pfam12796
      Location:122 → 209
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      35340472..35343791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525182.4 → XP_006525245.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006525245.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (3) summary
      sd00045
      Location:99 → 131
      ANK; ANK repeat [structural motif]
      pfam01585
      Location:248 → 290
      G-patch; G-patch domain
      pfam12796
      Location:99 → 186
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_030250157.1 → XP_030106017.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q0VBG8, Q61858, Q9R065
      Conserved Domains (3) summary
      sd00045
      Location:122 → 154
      ANK; ANK repeat [structural motif]
      pfam01585
      Location:271 → 313
      G-patch; G-patch domain
      pfam12796
      Location:122 → 209
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_006525184.1 → XP_006525247.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006525247.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (3) summary
      sd00045
      Location:99 → 131
      ANK; ANK repeat [structural motif]
      pfam01585
      Location:248 → 290
      G-patch; G-patch domain
      pfam12796
      Location:99 → 186
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q61858.2 GenPept UniProtKB/Swiss-Prot:Q61858

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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