U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Map7d1 MAP7 domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681287, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Map7d1provided by RGD
    Official Full Name
    MAP7 domain containing 1provided by RGD
    Primary source
    RGD:1597986
    See related
    Ensembl:ENSRNOG00000010237 AllianceGenome:RGD:1597986
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Mtap7d1
    Summary
    Predicted to be involved in microtubule cytoskeleton organization. Predicted to be located in cytosol. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D1 (MAP7 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 199.2), Muscle (RPKM 165.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Map7d1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143812467..143837597, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138527944..138552537, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144250416..144274981, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene uncharacterized LOC120103176 Neighboring gene uncharacterized LOC134486990 Neighboring gene trafficking protein particle complex subunit 3 Neighboring gene collagen type VIII alpha 2 chain

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    MAP7 domain-containing protein 1
    Names
    microtubule-associated protein 7 domain containing 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109438.1 → NP_001102908.1  MAP7 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001102908.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473968
      UniProtKB/TrEMBL
      A0A8I6AMK3, A6ISA0, D4A644
      Related
      ENSRNOP00000061878.1, ENSRNOT00000065871.2
      Conserved Domains (2) summary
      pfam05672
      Location:560 → 706
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      143812467..143837597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238906.5 → XP_006238968.1  MAP7 domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8I6AMK3
      Conserved Domains (2) summary
      pfam05672
      Location:520 → 666
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain

    2. XM_006238904.5 → XP_006238966.1  MAP7 domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AMK3
      Conserved Domains (2) summary
      pfam05672
      Location:552 → 698
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain

    3. XM_039110767.2 → XP_038966695.1  MAP7 domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AMK3
      Conserved Domains (4) summary
      PTZ00121
      Location:132 → 223
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:331 → 574
      PHA03247; large tegument protein UL36; Provisional
      PRK14971
      Location:9 → 130
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05672
      Location:555 → 703
      MAP7; MAP7 (E-MAP-115) family

    4. XM_006238902.5 → XP_006238964.1  MAP7 domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AMK3
      Conserved Domains (2) summary
      pfam05672
      Location:589 → 735
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain

    5. XM_039110768.2 → XP_038966696.1  MAP7 domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8I6AMK3
      Conserved Domains (4) summary
      PTZ00121
      Location:132 → 223
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:297 → 540
      PHA03247; large tegument protein UL36; Provisional
      PRK14971
      Location:9 → 130
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05672
      Location:521 → 669
      MAP7; MAP7 (E-MAP-115) family

    6. XM_006238903.5 → XP_006238965.1  MAP7 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I5Y1Q7, A0A8I6AMK3
      Related
      ENSRNOP00000077561.1
      Conserved Domains (2) summary
      pfam05672
      Location:555 → 701
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain

    7. XM_006238901.5 → XP_006238963.1  MAP7 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZM56, A0A8I6AMK3
      Related
      ENSRNOP00000078898.1
      Conserved Domains (2) summary
      pfam05672
      Location:592 → 738
      MAP7; MAP7 (E-MAP-115) family
      pfam14303
      Location:93 → 211
      NAM-associated; No apical meristem-associated C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous