Ift70b intraflagellar transport 70B [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ift70bprovided by RGD
Official Full Name: intraflagellar transport 70Bprovided by RGD
Primary source: RGD:1590784
See related: Ensembl:ENSRNOG00000059460 AllianceGenome:RGD:1590784
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ttc30b
Summary: Predicted to enable intraciliary transport particle B binding activity. Predicted to be involved in intraciliary transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in axonemal microtubule. Orthologous to several human genes including TTC30B (tetratricopeptide repeat domain 30B). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: 3q23

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (81263074..81265645, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (60855809..60858380, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (62758754..62761325, complement)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables intraciliary transport particle B binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in intraciliary transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intraciliary transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in axonemal microtubule	IBA Inferred from Biological aspect of Ancestor more info
located_in axonemal microtubule	IEA Inferred from Electronic Annotation more info
part_of intraciliary transport particle B	IBA Inferred from Biological aspect of Ancestor more info
part_of intraciliary transport particle B	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: intraflagellar transport protein 70B

Names: TPR repeat protein 30B; tetratricopeptide repeat domain 30B; tetratricopeptide repeat protein 30B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001127607.1 → NP_001121079.1 intraflagellar transport protein 70B

See identical proteins and their annotated locations for NP_001121079.1

Status: PROVISIONAL

Source sequence(s)

BC166739

UniProtKB/Swiss-Prot

B2RYD6

UniProtKB/TrEMBL

A0A0H2UHX9

Related

ENSRNOP00000045862.2, ENSRNOT00000050515.3

Conserved Domains (3) summary

sd00006
Location:157 → 181

TPR; TPR repeat [structural motif]

pfam13414
Location:158 → 215

TPR_11; TPR repeat

pfam14559
Location:21 → 87

TPR_19; Tetratricopeptide repeat