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    LINC00572 long intergenic non-protein coding RNA 572 [ Homo sapiens (human) ]

    Gene ID: 100861573, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC00572provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 572provided by HGNC
    Primary source
    HGNC:HGNC:43722
    See related
    Ensembl:ENSG00000224405 AllianceGenome:HGNC:43722
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00572 in Genome Data Viewer
    Location:
    13q12.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (29918647..29926651, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29141294..29149287, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30492784..30500788, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr13:30445927-30446158 Neighboring gene translocase of inner mitochondrial membrane 8B pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 297 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7529 Neighboring gene long intergenic non-protein coding RNA 544 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30537636-30538545 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30538546-30539454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30591649-30592150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30592151-30592650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619407-30619908 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619909-30620408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30651921-30652424 Neighboring gene long intergenic non-protein coding RNA 365

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047501.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139188
      Related
      ENST00000450264.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      29918647..29926651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      29141294..29149287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)