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    Zfp607a zinc finger protein 607A [ Mus musculus (house mouse) ]

    Gene ID: 545938, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Zfp607aprovided by MGI
    Official Full Name
    zinc finger protein 607Aprovided by MGI
    Primary source
    MGI:MGI:3584526
    See related
    Ensembl:ENSMUSG00000020420 AllianceGenome:MGI:3584526
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp607; 4732475C15Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF780A (zinc finger protein 780A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis adult (RPKM 2.3), bladder adult (RPKM 1.1) and 24 other tissues See more
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    Genomic context

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    See Zfp607a in Genome Data Viewer
    Location:
    7 A3; 7 15.97 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27559922..27606709)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27860494..27903063)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28589770-28589879 Neighboring gene zinc finger protein 626 Neighboring gene STARR-seq mESC enhancer starr_18392 Neighboring gene zinc finger protein 59 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28645358-28645700 Neighboring gene STARR-seq mESC enhancer starr_18395 Neighboring gene protein kinase C, zeta 2 Neighboring gene zinc finger protein 974 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28718534-28718717 Neighboring gene STARR-positive B cell enhancer ABC_E4911 Neighboring gene predicted gene, 26891 Neighboring gene predicted gene, 53355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 607A
    Names
    zinc finger proten 607

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024726.3 → NP_001019897.2  zinc finger protein 607A

      See identical proteins and their annotated locations for NP_001019897.2

      Status: VALIDATED

      Source sequence(s)
      AC139063
      Consensus CDS
      CCDS39852.1
      UniProtKB/TrEMBL
      Q3TQG9
      Related
      ENSMUSP00000146261.2, ENSMUST00000205534.2
      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:635 → 658
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      27559922..27606709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540210.5 → XP_006540273.1  zinc finger protein 607A isoform X1

      See identical proteins and their annotated locations for XP_006540273.1

      UniProtKB/TrEMBL
      Q3TQG9
      Related
      ENSMUSP00000051496.9, ENSMUST00000053722.9
      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:635 → 658
      zf-H2C2_2; Zinc-finger double domain

    2. XM_036153254.1 → XP_036009147.1  zinc finger protein 607A isoform X2

      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:608 → 632
      zf-H2C2_2; Zinc-finger double domain

    3. XM_030242802.2 → XP_030098662.1  zinc finger protein 607A isoform X3

      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:608 → 632
      zf-H2C2_2; Zinc-finger double domain

    4. XM_036153255.1 → XP_036009148.1  zinc finger protein 607A isoform X4

      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:608 → 632
      zf-H2C2_2; Zinc-finger double domain

    5. XM_036153253.1 → XP_036009146.1  zinc finger protein 607A isoform X1

      UniProtKB/TrEMBL
      Q3TQG9
      Conserved Domains (4) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:227 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:635 → 658
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_003946526.2 RNA Sequence

    2. XR_003946528.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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