LINCMD1 long intergenic non-protein coding RNA, muscle differentiation 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINCMD1provided by HGNC
Official Full Name: long intergenic non-protein coding RNA, muscle differentiation 1provided by HGNC
Primary source: HGNC:HGNC:49089
See related: MIM:614933; AllianceGenome:HGNC:49089
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: LINC-MD1; MIR133BHG
Expression: Low expression observed in reference dataset See more
Orthologs: mouse all
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Genomic context

Location:: 6p12.2

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	6	NC_000006.12 (52146814..52151023, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	6	NC_060930.1 (51985522..51989731, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	6	NC_000006.11 (52011612..52015821, complement)

Chromosome 6 - NC_000006.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Tenogenic differentiation of human tendon-derived stem cells induced by long non-coding RNA LINCMD1 via miR-342-3p/EGR1 axis.
Title: Tenogenic differentiation of human tendon-derived stem cells induced by long non-coding RNA LINCMD1 via miR-342-3p/EGR1 axis.
Its oncogenic activity is partially due to its repression of p21. and it may be a potential target for HCC therapy.
Title: Long noncoding RNA uc.338 promotes cell proliferation through association with BMI1 in hepatocellular carcinoma.
first report of lncRNA expression patterns in human ectopic and eutopic endometrial tissue from patients with ovarian endometriosis.
Title: Genome-wide profiling of long noncoding ribonucleic acid expression patterns in ovarian endometriosis by microarray.
Some lncRNAs and their associated protein-coding genes are closely related and may be part of a potential regulatory mechanism of uremia
Title: Genome-wide analysis of long noncoding RNA expression in peripheral blood mononuclear cells of uremia patients.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

MIR133B host gene (non-protein coding)
long noncoding RNA, muscle differentiation 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.