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    nol8 nucleolar protein 8 [ Danio rerio (zebrafish) ]

    Gene ID: 613021, updated on 27-Mar-2024

    Summary

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    Official Symbol
    nol8provided by ZNC
    Official Full Name
    nucleolar protein 8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-491
    See related
    Ensembl:ENSDARG00000044143 AllianceGenome:ZFIN:ZDB-GENE-050208-491
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-103f16.2
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in protein localization to nucleolus. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human NOL8 (nucleolar protein 8). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See nol8 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10425509..10440717, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10395805..10411033, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene nischarin Neighboring gene wu:fb55g09 Neighboring gene centromere protein P Neighboring gene osteoglycin, paralog a Neighboring gene osteomodulin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein localization to nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080202.1 → NP_001073671.1  nucleolar protein 8

      Status: PROVISIONAL

      Source sequence(s)
      BX908397
      UniProtKB/TrEMBL
      A0A8N7UYK6, Q1LV47
      Related
      ENSDARP00000102804.4, ENSDART00000111962.6
      Conserved Domains (2) summary
      cd12226
      Location:3 → 82
      RRM_NOL8; RNA recognition motif in nucleolar protein 8 (NOL8) and similar proteins
      pfam02455
      Location:1063 → 1173
      Hex_IIIa; Hexon-associated protein (IIIa)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      10425509..10440717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173974.4 → XP_005174031.1  nucleolar protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BLC0
      Conserved Domains (2) summary
      cd12226
      Location:3 → 82
      RRM_NOL8; RNA recognition motif in nucleolar protein 8 (NOL8) and similar proteins
      pfam02455
      Location:1117 → 1227
      Hex_IIIa; Hexon-associated protein (IIIa)
    Nucleotide Protein Strain
    Heading Accession and Version

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