smtn.L smoothelin L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: smtn.L
Official Full Name: smoothelin L homeolog
Primary source: Xenbase:XB-GENE-951902
Locus tag: XELAEV_18007387mg
See related: EnsemblRapid:ENSXLAG00005019390
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: smtn; smtn-a
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Genomic context

Location:: chromosome: 1L

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1L	NC_054371.1 (155931038..156013199)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1L	NC_030724.1 (142960434..143042663)

Chromosome 1L - NC_054371.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within actin cytoskeleton organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of filamentous actin	IEA Inferred from Electronic Annotation more info
located_in microtubule organizing center	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: smoothelin

Names: smoothelin a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001090120.1 → NP_001083589.1 smoothelin

See identical proteins and their annotated locations for NP_001083589.1

Status: PROVISIONAL

Source sequence(s)

BC061686

UniProtKB/TrEMBL

A0A974E1M7, Q6P7F7

Related

ENSXLAP00005057016.1, ENSXLAT00005058351.1

Conserved Domains (2) summary

cd00014
Location:751 → 851

CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...

pfam12510
Location:523 → 571

Smoothelin; Smoothelin cytoskeleton protein