U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    adsl.L adenylosuccinate lyase L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380285, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    adsl.L
    Official Full Name
    adenylosuccinate lyase L homeolog
    Primary source
    Xenbase:XB-GENE-1001545
    Locus tag
    XELAEV_18023676mg
    See related
    EnsemblRapid:ENSXLAG00005030944
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    adsl
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See adsl.L in Genome Data Viewer
    Location:
    chromosome: 4L
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (119761151..119787138)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (114438727..114464787)

    Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member F L homeolog Neighboring gene trinucleotide repeat containing 6B L homeolog Neighboring gene small G protein signaling modulator 3 L homeolog Neighboring gene provisional ortholog of chondroadherin L homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC53383

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within 'de novo' AMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within 'de novo' IMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within purine nucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within purine ribonucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    adenylosuccinate lyase L homeolog
    NP_001080593.1
    XP_018111983.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087124.1 → NP_001080593.1  adenylosuccinate lyase L homeolog

      See identical proteins and their annotated locations for NP_001080593.1

      Status: PROVISIONAL

      Source sequence(s)
      BC044021
      UniProtKB/TrEMBL
      Q7ZY16
      Related
      ENSXLAP00005093086.1, ENSXLAT00005094769.1
      Conserved Domains (2) summary
      cd03302
      Location:36 → 471
      Adenylsuccinate_lyase_2; Adenylsuccinate lyase (ASL)_subgroup 2
      TIGR00928
      Location:36 → 479
      purB; adenylosuccinate lyase

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      119761151..119787138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018256494.2 → XP_018111983.1  adenylosuccinate lyase L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GNT8, A0A974D5J0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous