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    SK13 SKP1-like 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825171, updated on 15-Oct-2023

    Summary

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    Gene symbol
    SK13
    Gene description
    SKP1-like 13
    Primary source
    Araport:AT3G60010
    Locus tag
    AT3G60010
    See related
    TAIR:AT3G60010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK13; SKP1-like 13; T2O9.1
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    Genomic context

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    See SK13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22162914..22163601, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 2B Neighboring gene QWRF motif protein (DUF566) Neighboring gene SKP1-like 5 Neighboring gene squamosa promoter-binding protein-like 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis SKP1-like protein13 (ASK13) positively regulates seed germination and seedling growth under abiotic stress. Rao V, et al. J Exp Bot, 2018 Jul 18. PMID 29788274, Free PMC Article
    2. E3 SUMO ligase AtSIZ1 positively regulates SLY1-mediated GA signalling and plant development. Kim SI, et al. Biochem J, 2015 Jul 15. PMID 26008766
    3. EDL3 is an F-box protein involved in the regulation of abscisic acid signalling in Arabidopsis thaliana. Koops P, et al. J Exp Bot, 2011 Nov. PMID 21831845, Free PMC Article
    4. Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. Bao Y, et al. Plant Mol Biol, 2014 Nov. PMID 25168737
    5. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 13
    NP_567090.1
    • SKP1-like 13 (SK13); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 11 (TAIR:AT4G34210.1); Has 1418 Blast hits to 1414 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 525; Fungi - 176; Plants - 537; Viruses - 11; Other Eukaryotes - 169 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22162914..22163601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115864.2 → NP_567090.1  SKP1-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567090.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1X5
      UniProtKB/TrEMBL
      A0A178VIM9, A0A5S9XME2
      Conserved Domains (2) summary
      cd18322
      Location:4 → 119
      BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
      pfam01466
      Location:105 → 152
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1X5.1

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