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    LINC02120 long intergenic non-protein coding RNA 2120 [ Homo sapiens (human) ]

    Gene ID: 340113, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02120provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2120provided by HGNC
    Primary source
    HGNC:HGNC:27971
    See related
    Ensembl:ENSG00000248279 AllianceGenome:HGNC:27971
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02120 in Genome Data Viewer
    Location:
    5p13.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (32947443..32962467)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (33062471..33077493)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (32947549..32962573)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 158 Neighboring gene natriuretic peptide receptor 3 Neighboring gene NPR3 intron CAGE-defined low expression enhancer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:32767828-32769027 Neighboring gene uncharacterized LOC124900956 Neighboring gene uncharacterized LOC124900955 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:32933642-32934142 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:32970338-32970603 Neighboring gene uncharacterized LOC105374715 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33008763-33009264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:33092903-33093402 Neighboring gene ribosomal protein S8 pseudogene 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033832.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC044935
      Related
      ENST00000505518.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      32947443..32962467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      33062471..33077493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)