pigx phosphatidylinositol glycan anchor biosynthesis, class X [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pigxprovided by ZNC
Official Full Name: phosphatidylinositol glycan anchor biosynthesis, class Xprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070705-212
See related: Ensembl:ENSDARG00000063559 AllianceGenome:ZFIN:ZDB-GENE-070705-212
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch73-159l23.2
Summary: Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (2931340..2937503, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (2915074..2921293, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within GPI anchor biosynthetic process	IEA Inferred from Electronic Annotation more info
involved_in GPI anchor biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: phosphatidylinositol-glycan biosynthesis class X protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001126436.1 → NP_001119908.1 phosphatidylinositol-glycan biosynthesis class X protein precursor

Status: PROVISIONAL

Source sequence(s)

CT027565

UniProtKB/TrEMBL

A0A8M1NHF7, A5WVS5

Related

ENSDARP00000087423.4, ENSDART00000092991.6

Conserved Domains (1) summary

pfam08320
Location:43 → 237

PIG-X; PIG-X / PBN1