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    rps19bp1 ribosomal protein S19 binding protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100005069, updated on 27-Mar-2024

    Summary

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    Official Symbol
    rps19bp1provided by ZNC
    Official Full Name
    ribosomal protein S19 binding protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110316-2
    See related
    Ensembl:ENSDARG00000091124 AllianceGenome:ZFIN:ZDB-GENE-110316-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable enzyme binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human RPS19BP1 (ribosomal protein S19 binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See rps19bp1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (265082..268038)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (247030..249989)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene transmembrane protease serine 6 Neighboring gene uncharacterized LOC108190354 Neighboring gene interleukin-2 receptor subunit beta-like Neighboring gene activating transcription factor 4a Neighboring gene uncharacterized LOC557729

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables enzyme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    active regulator of SIRT1; ribosomal protein S19 binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386402.1 → NP_001373331.1  ribosomal protein S19 binding protein 1

      Status: VALIDATED

      Source sequence(s)
      CABZ01084579
      UniProtKB/TrEMBL
      A0A8M2BJX0, E7F0U9
      Conserved Domains (1) summary
      pfam15684
      Location:30 → 131
      AROS; Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      265082..268038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172057.4 → XP_005172114.1  active regulator of SIRT1

      UniProtKB/TrEMBL
      E7F0U9
      Related
      ENSDARP00000111428.1, ENSDART00000123769.3
      Conserved Domains (1) summary
      pfam15684
      Location:30 → 131
      AROS; Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1
    Nucleotide Protein Strain
    Heading Accession and Version

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