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    lin52 lin-52 DREAM MuvB core complex component [ Danio rerio (zebrafish) ]

    Gene ID: 777755, updated on 27-Mar-2024

    Summary

    Official Symbol
    lin52provided by ZNC
    Official Full Name
    lin-52 DREAM MuvB core complex componentprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061110-82
    See related
    Ensembl:ENSDARG00000070833 AllianceGenome:ZFIN:ZDB-GENE-061110-82
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7159269; zgc:153771
    Summary
    Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of DRM complex. Orthologous to human LIN52 (lin-52 DREAM MuvB core complex component). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See lin52 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (31667625..31695217, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (31650662..31678254, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438044 Neighboring gene visual system homeobox 2 Neighboring gene protein-O-mannosyltransferase 2 Neighboring gene D-aminoacyl-tRNA deacylase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of DRM complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein lin-52 homolog
    Names
    lin-52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077796.1NP_001071264.1  protein lin-52 homolog

      See identical proteins and their annotated locations for NP_001071264.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124731
      UniProtKB/Swiss-Prot
      A0AUQ6
      Related
      ENSDARP00000114392.1, ENSDART00000143090.3
      Conserved Domains (1) summary
      pfam10044
      Location:14107
      LIN52; Retinal tissue protein

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      31667625..31695217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)